Give them the trash bytes they need. You might want to check out your other uploads (such as this one or this one) because you're consistently neglecting trash bytes.
Trash bytes don't matter at all for personal collection/FC/wireless battles, so there's no need for you to 'fix' them.
Here's more info on how trash bytes occur:
http://projectpokemon.org/forums/showthread.php?15108
For the record, I perfectly understand what you're asking and know the exact fix. Problem is, telling you exactly how to fix it is against this forum's TOS (which I linked to you in my first post).