Chill, you should always keep backups.
I've already said to NOT use the ORAS PKHeX version when editing X/Y saves. ORAS content is not supported in the last stable release, so editing ORAS PKM files won't work.
I do not have any involvement with CyberGadget; as I've already mentioned they do not support ORAS yet. When/If they do add support for their device, PKHeX will already be compatible as SaveDataFiler saves are identical.
r4i save dongle has never supported save resigning.