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Are you putting the mon straight into party or into PC first? I was able to get the trade evolutions to work normally lol I basically import them into PC, then withdraw them from PC into party. (Yeah when I import straight into party, they wouldn't evolve when traded)

importing one at a time didnt work but i figured it out, instead of ticking unlock 32 boxes, i did 31 and the issue was resolved apparently

whether the save has been PKHeX'd should make no difference to CITRA, cause it'll be indistinguishable from a normal save. Perhaps you're only supposed to turn on the cheats after the save is loaded, or maybe CITRA is storing some data about the previous save somewhere else, so when you loaded a different save, it 'notices' the difference. In any case, issue solved, locking thread. edit: anyway, just informing you that Pokémon doesn't run well on CITRA. It'll lock up randomly across gameplay, and there is no true solution besides playing the games on a 3DS.

I finally made it work, I just turned off the cheats with the edited PKhex save file and is now working! THANKS! I wonder if I turned on cheats with a PKhex save dont know if will still be corrupted

so at least we know it loads without a main, and creates one, meaning you're for sure on the right window. Also, CITRA loaded your save. so the issue isn't with PKHeX, but with CITRA. The save isn't corrupted. consider: 1. try loading games without cheats. 2. if that doesn't work, get the latest version of CITRA (I think the latest one doesn't support cheats, so you're probably not on the latest)