Heh, that's fine. I'd've deleted this the post if I'd thought no-one else would be interested Sorry for taking so long to get back to you - I somehow managed not to check my e-mails for about 3-4 days, which I think is a record for me! And yeah, my games on all the memory cards seem to work perfectly. I'd strongly recommend keeping your original save file on its original memory card just in case, though. It never hurts to be safe.
Do you have an SD Media Launcher (that's a UK link, equivalent US link)? I think there are some other similar things available, but that's what I used.
Sorry if any of the following sounds patronising - I have no idea if you've done any of this stuff before. Equally, I'm sorry if this is at all hard to follow; I'm not good at explaining things.
I bought an SD Media Launcher and an SD card, then downloaded GCMM (to download, click the Download link on the right of that page, then the "gcmm_10.rar" link on the right of that page). I extracted the .rar, copied gcmm.dol (in the "gamecube" folder) to the root of the SD card, and created a folder called MCBACKUP in the root of the SD card. (The root of the SD card is when you're not in any folders, so you'll be in something like "F:\" instead of, say, "F:\Blah".)
Then I put the SD Media Launcher disc in my GameCube, the SD Media Launcher memory card with the SD card in into slot 1, and my memory card with my Pokemon Colosseum save into slot 2, started the GameCube up and waited for it to load, then selected gcmm.dol.
It's fairly self-explanatory after that. There's a button to press (I think it's Y) to back files up to the SD card, then you can switch the memory card for a different one and restore (X button?) the save file to that. If it comes up with error messages when backing up or restoring, try taking the memory card out of slot 2 and putting it in again, then trying again. The restored save file should work okay (mine loads and saves just fine), and you can move or copy it to other memory cards within the normal GameCube memory card menu thingy, instead of those options being greyed out.
You can also copy the save files (.gci files) from the MCBACKUP folder to your computer for safekeeping.
If you've already tried this or have any problems, let me know. I may not be able to help, but it's worth a try, and I'll try and get back to you a bit quicker next time! Good luck!