Ok, I finally figured everything out with the GTS server. My main question is, how do I keep it up and running permanently? It seems that it only works for the first time, then shuts down. I'm more then likely doing something wrong.
Idealy I would like it to be kept up, so that people could deposit pokemon, and I can deposit my own, to check legitimacey. But the way I have it running now, wont help much for that. The thing that has me the most confused I think is when it asks for the ip, I entered the dns given by the pkmnsend which I thought you were supposed to do. Correct me if i'm wrong, please! lol