PK Hex idea

[Diesel1889]

I was just thinking that it might be helpful to lock a box from the sorting process.

 

for example if you have all event Pokémon in a box and mystery gifts in another plus a living dex you don’t really want to sort by Pokédex number and have them all mixed together. 

[Kaphotics]

You can export a box binary for each box you don't want to sort, then clear the box. After sorting, import each box binary.

If you care about retaining the box names, you can always reorder boxes to have those boxes last.

[foohyfooh]

If all of the boxes you want to sort a next to each other with none of the event holding boxes in between then you can use my sorting plugin and in the settings specify the  start and end boxes to sort otherwise you should just follow Kaphotics advice.