itmakesyounormal

I'm not very into the editing/hacking thing and I tried following these instructions but I'm really confused. I used PPRE 2 just to edit around some base stats/abilities/types of some pokemon. I got everything to save (that saving a color thing mentioned above did the trick) but now that I'm happy and finished with my edits, I can't get it to save/write the ROM file... which if I understand correctly is what the passage I quoted is supposed to solve. Is there an easier to way get the program to save the edited, finished project (.pprj) file to save as a playable ROM? Or would anyone be able to explain the above to someone without as much experience with these programs?