I am not sure if I can ignore it.
I can't take pokemon out of Pokemon Pelago as far as I searched. So they ARE currently occupying Isle Abeens (other Isles require you to actively select and put pokemon in them. This one is the default and is what's creating the Resort error).
Every time I make an edit in PKHex, the save file gets corrupted due to it, and I can't open them. I tried by making a simple edit of changing Trainer Money, as well as changing Pokemon stats.
I am not sure how to get around this issue, if I can't take the Pokemon out of the Resort status, and save files will be corrupted because of it.