mega stones missing in satchel

[haze7714]

I've Given myself all the mega stones, I did this before even getting my first one in game. Is this the reason I don't have them in my satchel? I can bypass by giving pokemon the stone to hold using pkhex. My question is does anyone know how I can fix this to make them appear in my satchel.. Yes I know I should of kept a save of my game before using pk hex. I did, I'm just to far in the game now to go back and loose hours of gameplay.