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PKHeX corrupting VC Crystal save files


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I've been trying to use pkhex to edit my save on vc crystal, yet every time I export the sav file back into the game, it says the save is corrupted. 

I've tried just opening the save file with pkhex and then exporting it right back, without editing anything, and for some reason it still corrupts. Tried editing on an emulator and it worked perfectly. Editing through PKSM also works just fine. Very confused at this point. 

I use checkpoint to backup and restore saves and open them straight from the microsd card using pkhex. 

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