So I've used Pkhex before and its worked fine (prior to this update) but now When i save the file to my sd card there is two mains, Main and Main.bin, the .bin one has the pokemon that i have just made where as the main is the old save and when i save it always saves as the .bin one and then when i import it it imports the old save (using homebrew btw, and also on the 10.3 3ds update)