I'm not sure if there is any updating still going on. However I had an idea on how to use Pokegen more efficiently, especially if one is doing a lot of stuff with it.
--PID Finder Options--
1) Set a flag so whenever you open this, it automatically sets:
Nature to (Any)
Gender to Either
Ability to Either
(This is mainly to speed up the finding of a PID, especially if you don't care whether you get a male/female, or what nature it has.)
Edit: I nearly forgot this one. The option to just click on a Storage Box slot, and have the Pokemon data pop up, without having to hold down Alt, or go through the R-Click menu. It's not a huge thing, but it can be really annoying when you mean to click View Data, and accidentally click Set, due to their close proximity to one another.
If not this, then maybe a couple of ----- spacer lines between View Data and Set, in order to make it harder to accidentally misclick one.