Finally got around to playing with this again after taking a break out of frustration and no dice, even after deleting the index numbers.
Did go ahead and upload the screenshot, this is after deleting the index numbers.
(And I think I read somewhere that Gen IV only had room for three wonder cards so I won't be able to collect Regigigas just yet, but I was having this issue when I was just trying for Arceus, Raikou, and Entei)
Now I had tried importing before I realized you had to enable Mystery Gift in game, that wouldn't have an effect? (Since I did delete and reimport them after enabling Mystery Gift)