PPSE Issues

[tkdtju]

I know that I saw this same concern posted somewhere but I couldn't find it, after I use PPSE to edit my Pokedex entries (I had just used Pokesav to add some Pokemon from Colosseum and ) and when I load the save back onto my retail cart all my party pokemon have incredibly low stats (they are all in low to high 80's It fixes it when I use a rare candy on them but I am wondering why this is happening is it something that I am doing in PPSE or what?