Thanks. Seemed strange considering ir-gts-bw would work all the time.
I encountered a couple different errors when I first started, mainly that the wireless would start red, go green, then go red again. ( on the DS) It still was the same error on the program though. I cannot recreate this error now, though.
Edit:
This also popped up when trying to launch with a the folder option.
http://img195.imageshack.us/i/errorpkm2.png/