Sorry, yes, I ment "boxes" in the visual sense when using PokeGen.
In Response to question 2, I wasn't too clear on, for which I apologize. I want to clarify and extend: I know that depending on the slot the pokemon is in, it overwrites that slot in the Party. That being said, I notice the system has its own set of "PC Boxes". Do those boxes corispond to the in game PC boxes or is that PokeGens own set of boxes for storing pokemon?
If that is not the case, then I could either choose the PokeGen'd pokemon to be created in either the party or the PC Box of my choice? On that note, does creating a pokemon in the selected PC Box also erase the pokemon in there or can I choose an empty PC Box?
Hopefully this one makes more sense.